ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1k5mC1 - ECOD Domain | ECOD

ECOD/Domains/e1k5mC1

e1k5mC1

UID: 000031059

PDB

Range: C:1601-1836
PDB: 1K5M chain C(all domains)
UniProt: P03303 (all domains)

Molecule: COAT PROTEIN VP3 (P1C)

3D Structure

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Related Domains

Browse other domains in Rhv, Calici_coat →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyRhv, Calici_coat(10.2.1.88)

Ligands

in contact, ≤ 4 Å

SphingosineSPH

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

picornavirus capsid protein

ClanCL0055Nucleoplasmin

PF00915Calici_coat

Calicivirus coat protein

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 1K5M RCSB PDB: 1K5M PDBe: 1K5M UniProt: P03303

Downloads

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