ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7ymib2 - ECOD Domain | ECOD

ECOD/Domains/e7ymib2

e7ymib2

UID: 003111975

PDB

Range: b:2-328,b:445-480
PDB: 7YMI chain b(all domains)

Molecule: Photosystem II CP47 reaction center protein

3D Structure

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Related Domains

Browse other domains in PSII →

Classification

AArchitecturealpha bundles(a.7)

XX-groupPhotosystem II antenna protein-like(5075)

HH-groupPhotosystem II antenna protein-like(5075.1)

TT-groupPhotosystem II antenna protein-like(5075.1.1)

FFamilyPSII(5075.1.1.2)

Ligands

in contact, ≤ 4 Å

Digalactosyl Diacyl Glycerol (Dgdg)DGD
drugDrugBank DB03426
1,2-Dipalmitoyl-Phosphatidyl-GlyceroleLHG
drugDrugBank DB02043

Pfam Families

Photosystem II protein

External Links

ECOD PDB View: 7YMI RCSB PDB: 7YMI PDBe: 7YMI

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(6'R,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene8CT

Chlorophyll dCL7

1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDELMG

1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLSQD

Shown in the structure viewer. Drug annotations from DrugDomain.