ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2c9bC1 - ECOD Domain | ECOD

ECOD/Domains/e2c9bC1

e2c9bC1

UID: 000311583

PDB

Range: C:15-160
PDB: 2C9B chain C(all domains)
UniProt: P9WHE9 (all domains)
Gene: ribH

Molecule: 6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE

3D Structure

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Related Domains

Browse other domains in DMRL_synthase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupLumazine synthase(2007.1.13)

FFamilyDMRL_synthase(2007.1.13.1)

Ligands

in contact, ≤ 4 Å

Potassium ionK
metal
3-(1,3,7-TRIHYDRO-9-D-RIBITYL-2,6,8-PURINETRIONE-7-YL)PUG

+ 2 additives ((4r)-2-Methylpentane-2,4-Diol, Phosphate ion)

(4r)-2-Methylpentane-2,4-Diol

Pfam Families

PF00885DMRL_synthase

6,7-dimethyl-8-ribityllumazine synthase

External Links

ECOD PDB View: 2C9B RCSB PDB: 2C9B PDBe: 2C9B UniProt: P9WHE9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03564

Phosphate ionPO4

DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.