ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

P40493_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/P40493_F1_nD2

P40493_F1_nD2

UID: 003171802

AlphaFold

Range: 41-315
AlphaFold: AF-P40493
UniProt: P40493 (all domains)
Gene: BMT5

Protein: 25S rRNA (uridine(2634)-N(3))-methyltransferase (EC 2.1.1.313) (Base methyltransferase of 25S RNA 5)

3D Structure

Loading viewer...

Related Domains

Browse other domains in BMT5-like →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyBMT5-like(2003.1.5.176)

Pfam Families

PF10354BMT5-like

rRNA (uridine-N3-)-methyltransferase BTM5-like

ClanCL0063NADP_Rossmann

External Links

AlphaFold DB: P40493 UniProt: P40493

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 41-315