ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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P16658_F1_nD4 - ECOD Domain | ECOD

ECOD/Domains/P16658_F1_nD4

P16658_F1_nD4

UID: 003174317

AlphaFold

Range: 256-375
AlphaFold: AF-P16658
UniProt: P16658 (all domains)
Gene: SEN2

Protein: tRNA-splicing endonuclease subunit SEN2 (EC 4.6.1.16) (Splicing endonuclease protein 2) (tRNA-intron endonuclease SEN2)

3D Structure

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Related Domains

Browse other domains in tRNA_int_endo →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRestriction endonuclease-like(2008)

HH-grouptRNA-intron endonuclease catalytic domain-like(2008.2)

TT-grouptRNA-intron endonuclease catalytic domain-like(2008.2.1)

FFamilytRNA_int_endo(2008.2.1.1)

Pfam Families

PF01974tRNA_int_endo

tRNA intron endonuclease, catalytic C-terminal domain

ClanCL0236PDDEXK

External Links

AlphaFold DB: P16658 UniProt: P16658

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 256-375