ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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P09880_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/P09880_F1_nD1

P09880_F1_nD1

UID: 003175170

AlphaFold

Range: 11-290
AlphaFold: AF-P09880
UniProt: P09880 (all domains)
Gene: TRL1

Protein: tRNA ligase (EC 6.5.1.3)

3D Structure

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Related Domains

Browse other domains in RNA_lig_T4_1 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupATP-grasp(206.1.3)

FFamilyRNA_lig_T4_1(206.1.3.24)

Pfam Families

PF09511RNA_lig_T4_1

RNA ligase

ClanCL0179ATP-grasp

External Links

AlphaFold DB: P09880 UniProt: P09880

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 11-290