ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q08960_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q08960_F1_nD2

Q08960_F1_nD2

UID: 003176841

AlphaFold

Range: 416-785
AlphaFold: AF-Q08960
UniProt: Q08960 (all domains)
Gene: TYW1

Protein: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase (EC 4.1.3.44) (tRNA wybutosine-synthesizing protein 1)

3D Structure

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Related Domains

Browse other domains in Radical_SAM,Wyosine_form →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyRadical_SAM,Wyosine_form(2002.1.1.123)

Pfam Families

PF04055Radical_SAM

Radical SAM superfamily

ClanCL0036TIM_barrel

PF08608Wyosine_form

Wyosine base formation

External Links

AlphaFold DB: Q08960 UniProt: Q08960

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 416-785