ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

Q55E88_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q55E88_F1_nD1

Q55E88_F1_nD1

UID: 003247999

AlphaFold

Range: 6-70,161-235,286-325
AlphaFold: AF-Q55E88
UniProt: Q55E88 (all domains)
Gene: DDB_G0269348

Protein: tRNA (uracil-O(2)-)-methyltransferase (EC 2.1.1.211)

3D Structure

Loading viewer...

Related Domains

Browse other domains in Bet_v_1_TRM44_N →

Classification

AArchitecturea+b two layers(a.11)

XX-groupTBP-like(331)

HH-groupBet v1-like(331.3)

TT-groupBet v1-like(331.3.1)

FFamilyBet_v_1_TRM44_N(331.3.1.45)

Pfam Families

PF28462Bet_v_1_TRM44_N

TRM44-like, N-terminal bet v1-like domain

ClanCL0209Bet_v_1_like

External Links

AlphaFold DB: Q55E88 UniProt: Q55E88

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 6-70,161-235,286-325