ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q556W4_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q556W4_F1_nD1

Q556W4_F1_nD1

UID: 003249146

AlphaFold

Range: 16-90,261-275
AlphaFold: AF-Q556W4
UniProt: Q556W4 (all domains)
Gene: DDB_G0273343

Protein: tRNA-splicing endonuclease subunit SEN34 (EC 4.6.1.16) (tRNA-splicing endonuclease subunit Sen34)

3D Structure

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Related Domains

Browse other domains in TSEN34_N →

Classification

AArchitecturea+b two layers(a.11)

XX-groupHoming endonucleases-like(242)

HH-grouptRNA-intron endonuclease N-terminal domain-like(242.2)

TT-grouptRNA-intron endonuclease N-terminal domain-like(242.2.1)

FFamilyTSEN34_N(242.2.1.7)

Pfam Families

PF26577TSEN34_N

TSEN34-like, N-terminal domain

ClanCL0476tRNA-IECD_N

External Links

AlphaFold DB: Q556W4 UniProt: Q556W4

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 16-90,261-275