ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

Q54SM6_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q54SM6_F1_nD1

Q54SM6_F1_nD1

UID: 003249932

AlphaFold

Range: 66-120
AlphaFold: AF-Q54SM6
UniProt: Q54SM6 (all domains)
Gene: DDB_G0282355

Protein: Integrase catalytic domain-containing protein

3D Structure

Loading viewer...

Related Domains

Browse other domains in Integrase_H2C2 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupThree-helical HTH(101.1.1)

FFamilyIntegrase_H2C2(101.1.1.76)

Pfam Families

PF17921Integrase_H2C2

Integrase zinc binding domain

ClanCL0361C2H2-zf

External Links

AlphaFold DB: Q54SM6 UniProt: Q54SM6

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 66-120