ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q54BD5_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q54BD5_F1_nD1

Q54BD5_F1_nD1

UID: 003254544

AlphaFold

Range: 136-165
AlphaFold: AF-Q54BD5
UniProt: Q54BD5 (all domains)
Gene: trm13

Protein: tRNA:m(4)X modification enzyme TRM13 homolog (EC 2.1.1.225)

3D Structure

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Related Domains

Browse other domains in zf-U11-48K →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupbeta-beta-alpha zinc fingers(386)

HH-groupbeta-beta-alpha zinc fingers(386.1)

TT-groupbeta-beta-alpha zinc fingers(386.1.1)

FFamilyzf-U11-48K(386.1.1.7)

Pfam Families

PF05253zf-U11-48K

U11-48K-like CHHC zinc finger

ClanCL0361C2H2-zf

External Links

AlphaFold DB: Q54BD5 UniProt: Q54BD5

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 136-165