ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q54RK3_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q54RK3_F1_nD1

Q54RK3_F1_nD1

UID: 003257361

AlphaFold

Range: 16-70
AlphaFold: AF-Q54RK3
UniProt: Q54RK3 (all domains)
Gene: DDB_G0283133

Protein: Integrase catalytic domain-containing protein

3D Structure

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Related Domains

Browse other domains in Integrase_H2C2 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupThree-helical HTH(101.1.1)

FFamilyIntegrase_H2C2(101.1.1.76)

Pfam Families

PF17921Integrase_H2C2

Integrase zinc binding domain

ClanCL0361C2H2-zf

External Links

AlphaFold DB: Q54RK3 UniProt: Q54RK3

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 16-70