ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q54IZ9_F1_nD7 - ECOD Domain | ECOD

ECOD/Domains/Q54IZ9_F1_nD7

Q54IZ9_F1_nD7

UID: 003257884

AlphaFold

Range: 1246-1370
AlphaFold: AF-Q54IZ9
UniProt: Q54IZ9 (all domains)
Gene: polr3b

Protein: DNA-directed RNA polymerase III subunit rpc2 (RNA polymerase III subunit C2) (EC 2.7.7.6) (DNA-directed RNA polymerase III subunit B) [Cleaved into: Ddi rpc2 intein]

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb2_6 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupalpha/beta-Hammerhead/Barrel-sandwich hybrid(325)

HH-groupalpha/beta-Hammerhead/Barrel-sandwich hybrid(325.1)

TT-groupSingle hybrid motif(325.1.7)

FFamilyRNA_pol_Rpb2_6(325.1.7.2)

Pfam Families

PF00562RNA_pol_Rpb2_6

RNA polymerase Rpb2, domain 6

ClanCL0410LEF-8-like

External Links

AlphaFold DB: Q54IZ9 UniProt: Q54IZ9

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 1246-1370