ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q54RC3_F1_nD4 - ECOD Domain | ECOD

ECOD/Domains/Q54RC3_F1_nD4

Q54RC3_F1_nD4

UID: 003258137

AlphaFold

Range: 676-730,841-893
AlphaFold: AF-Q54RC3
UniProt: Q54RC3 (all domains)
Gene: top1

Protein: DNA topoisomerase 1 (EC 5.6.2.1) (DNA topoisomerase I)

3D Structure

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Related Domains

Browse other domains in Topoisom_I,Topo_C_assoc →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupDNA breaking-rejoining enzymes(101.1.8)

FFamilyTopoisom_I,Topo_C_assoc(101.1.8.3)

Pfam Families

PF01028Topoisom_I

Eukaryotic DNA topoisomerase I, catalytic core

ClanCL0382DNA-mend

PF14370Topo_C_assoc

C-terminal topoisomerase domain

External Links

AlphaFold DB: Q54RC3 UniProt: Q54RC3

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 676-730,841-893