ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q55GM6_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/Q55GM6_F1_nD3

Q55GM6_F1_nD3

UID: 003265736

AlphaFold

Range: 171-440,471-520
AlphaFold: AF-Q55GM6
UniProt: Q55GM6 (all domains)
Gene: mserS

Protein: serine--tRNA ligase (EC 6.1.1.11) (Seryl-tRNA synthetase)

3D Structure

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Related Domains

Browse other domains in tRNA-synt_2b →

Classification

AArchitecturea+b three layers(a.12)

XX-groupClass II aaRS and biotin synthetases(314)

HH-groupClass II aaRS and biotin synthetases(314.1)

TT-groupClass II aaRS and biotin synthetases(314.1.1)

FFamilytRNA-synt_2b(314.1.1.2)

Pfam Families

PF00587tRNA-synt_2b

tRNA synthetase class II core domain (G, H, P, S and T)

ClanCL0040tRNA_synt_II

External Links

AlphaFold DB: Q55GM6 UniProt: Q55GM6

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 171-440,471-520