ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

Q54VD1_F1_nD9 - ECOD Domain | ECOD

ECOD/Domains/Q54VD1_F1_nD9

Q54VD1_F1_nD9

UID: 003266987

AlphaFold

Range: 1356-1420
AlphaFold: AF-Q54VD1
UniProt: Q54VD1 (all domains)
Gene: DDB_G0280521

Protein: RNA-directed DNA polymerase (EC 2.7.7.49)

3D Structure

Loading viewer...

Related Domains

Browse other domains in Integrase_p58_C →

Classification

AArchitecturebeta barrels(a.1)

XX-groupSH3(4)

HH-groupSH3(4.1)

TT-groupSH3(4.1.1)

FFamilyIntegrase_p58_C(4.1.1.224)

Pfam Families

PF22938Integrase_p58_C

Integrase p58, C-terminal domain

ClanCL0010SH3

External Links

AlphaFold DB: Q54VD1 UniProt: Q54VD1

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 1356-1420