ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

Q54YS6_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q54YS6_F1_nD1

Q54YS6_F1_nD1

UID: 003267029

AlphaFold

Range: 21-225
AlphaFold: AF-Q54YS6
UniProt: Q54YS6 (all domains)
Gene: pnpo

Protein: Pyridoxine-5'-phosphate oxidase (EC 1.4.3.5) (Pyridoxamine-phosphate oxidase)

3D Structure

Loading viewer...

Related Domains

Browse other domains in Putative_PNPOx,PNP_phzG_C →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel(1.1.5)

FFamilyPutative_PNPOx,PNP_phzG_C(1.1.5.9)

Pfam Families

PF01243PNPOx_N

Pyridoxamine 5'-phosphate oxidase

ClanCL0336FMN-binding

PF10590PNP_phzG_C

Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region

External Links

AlphaFold DB: Q54YS6 UniProt: Q54YS6

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 21-225