ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q54BD5_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q54BD5_F1_nD2

Q54BD5_F1_nD2

UID: 003272757

AlphaFold

Range: 171-425,481-525
AlphaFold: AF-Q54BD5
UniProt: Q54BD5 (all domains)
Gene: trm13

Protein: tRNA:m(4)X modification enzyme TRM13 homolog (EC 2.1.1.225)

3D Structure

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Related Domains

Browse other domains in TRM13 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyTRM13(2003.1.5.95)

Pfam Families

Methyltransferase TRM13

ClanCL0063NADP_Rossmann

External Links

AlphaFold DB: Q54BD5 UniProt: Q54BD5

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 171-425,481-525