ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q54IZ9_F1_nD8 - ECOD Domain | ECOD

ECOD/Domains/Q54IZ9_F1_nD8

Q54IZ9_F1_nD8

UID: 003276406

AlphaFold

Range: 1211-1245,1371-1490
AlphaFold: AF-Q54IZ9
UniProt: Q54IZ9 (all domains)
Gene: polr3b

Protein: DNA-directed RNA polymerase III subunit rpc2 (RNA polymerase III subunit C2) (EC 2.7.7.6) (DNA-directed RNA polymerase III subunit B) [Cleaved into: Ddi rpc2 intein]

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb2_6 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupdouble psi(1.1.2)

FFamilyRNA_pol_Rpb2_6(1.1.2.1)

Pfam Families

PF00562RNA_pol_Rpb2_6

RNA polymerase Rpb2, domain 6

ClanCL0410LEF-8-like

External Links

AlphaFold DB: Q54IZ9 UniProt: Q54IZ9

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 1211-1245,1371-1490