ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

I1KYM5_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/I1KYM5_F1_nD2

I1KYM5_F1_nD2

UID: 003295682

AlphaFold

Range: 196-510
AlphaFold: AF-I1KYM5
UniProt: I1KYM5 (all domains)
Gene: LOC100789776

Protein: SAM-dependent MTase RsmB/NOP-type domain-containing protein

3D Structure

Loading viewer...

Related Domains

Browse other domains in Methyltr_RsmB-F →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyMethyltr_RsmB-F(2003.1.5.6)

Pfam Families

PF01189Methyltr_RsmB-F

16S rRNA methyltransferase RsmB/F

ClanCL0063NADP_Rossmann

External Links

AlphaFold DB: I1KYM5 UniProt: I1KYM5

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 196-510