ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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I1K5W4_F1_nD4 - ECOD Domain | ECOD

ECOD/Domains/I1K5W4_F1_nD4

I1K5W4_F1_nD4

UID: 003307108

AlphaFold

Range: 546-1080
AlphaFold: AF-I1K5W4
UniProt: I1K5W4 (all domains)
Gene: GLYMA_05G229600

Protein: RING-type E3 ubiquitin transferase (EC 2.3.2.27)

3D Structure

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Related Domains

Browse other domains in ARM_LIN_C, ARM_LIN_2nd →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyARM_LIN_C, ARM_LIN_2nd(109.4.1.1409)

Pfam Families

PF23628ARM_LIN_C

Putative E3 ubiquitin-protein ligase LIN, ARM-like domain

ClanCL0020TPR

PF23654ARM_LIN_2nd

E3 ubiquitin-protein ligase LIN-like, ARM repeat

ClanCL0020TPR

External Links

AlphaFold DB: I1K5W4 UniProt: I1K5W4

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 546-1080