ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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A0A0R0K847_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/A0A0R0K847_F1_nD1

A0A0R0K847_F1_nD1

UID: 003312029

RepresentativeAlphaFold

Range: 16-110
AlphaFold: AF-A0A0R0K847
UniProt: A0A0R0K847 (all domains)
Gene: GLYMA_04G138800

Protein: Retrotransposon Copia-like N-terminal domain-containing protein

3D Structure

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Related Domains

Browse other domains in Retrotran_gag_2, Retrotran_gag_3 →

Classification

AArchitecturealpha bundles(a.7)

XX-groupRetrovirus capsid protein(170)

HH-groupRetrovirus capsid protein N-terminal domain(170.2)

TT-groupRetrovirus capsid protein N-terminal domain(170.2.1)

FFamilyRetrotran_gag_2, Retrotran_gag_3(170.2.1.36)

Pfam Families

PF14223Retrotran_gag_2

gag-polypeptide of LTR copia-type

ClanCL0523GAG-polyprotein

PF14244Retrotran_gag_3

Gag-polypeptide of LTR copia-type

ClanCL0523GAG-polyprotein

External Links

AlphaFold DB: A0A0R0K847 UniProt: A0A0R0K847

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 16-110