ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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UT Southwestern
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I1M5V2_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/I1M5V2_F1_nD3

I1M5V2_F1_nD3

UID: 003322966

AlphaFold

Range: 296-485
AlphaFold: AF-I1M5V2
UniProt: I1M5V2 (all domains)
Gene: LOC100789217

Protein: Signal recognition particle 54 kDa protein

3D Structure

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Related Domains

Browse other domains in SRP_SPB →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupThree-helical HTH(101.1.1)

FFamilySRP_SPB(101.1.1.19)

Pfam Families

PF02978SRP_SPB

Signal peptide binding domain

ClanCL0123HTH

External Links

AlphaFold DB: I1M5V2 UniProt: I1M5V2

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 296-485