ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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I1JMF5_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/I1JMF5_F1_nD1

I1JMF5_F1_nD1

UID: 003328809

AlphaFold

Range: 16-390
AlphaFold: AF-I1JMF5
UniProt: I1JMF5 (all domains)
Gene: LOC100784002

Protein: Polygalacturonase

3D Structure

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Related Domains

Browse other domains in Glyco_hydro_28 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded right-handed beta-helix(207)

HH-groupPectin lyase-like(207.2)

TT-groupPectin lyase-like(207.2.1)

FFamilyGlyco_hydro_28(207.2.1.1)

Pfam Families

PF00295Glyco_hydro_28

Glycosyl hydrolases family 28

ClanCL0268Pec_lyase-like

External Links

AlphaFold DB: I1JMF5 UniProt: I1JMF5

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 16-390