ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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I1MKT0_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/I1MKT0_F1_nD1

I1MKT0_F1_nD1

UID: 003336686

AlphaFold

Range: 56-490
AlphaFold: AF-I1MKT0
UniProt: I1MKT0 (all domains)
Gene: LOC100778404

Protein: Rhamnogalacturonase A/B/Epimerase-like pectate lyase domain-containing protein

3D Structure

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Related Domains

Browse other domains in Glyco_hydro_28,Pectate_lyase_3 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupSingle-stranded right-handed beta-helix(207)

HH-groupPectin lyase-like(207.2)

TT-groupPectin lyase-like(207.2.1)

FFamilyGlyco_hydro_28,Pectate_lyase_3(207.2.1.2)

Pfam Families

PF00295Glyco_hydro_28

Glycosyl hydrolases family 28

ClanCL0268Pec_lyase-like

PF12708Pect-lyase_RHGA_epim

Rhamnogalacturonase A/epimerase, pectate lyase-like

ClanCL0268Pec_lyase-like

External Links

AlphaFold DB: I1MKT0 UniProt: I1MKT0

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 56-490