ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3bp9U1 - ECOD Domain | ECOD

ECOD/Domains/e3bp9U1

e3bp9U1

UID: 000335888

PDB

Range: U:1-131
PDB: 3BP9 chain U(all domains)
UniProt: P03336 (all domains)
Gene: gag

Molecule: Gag polyprotein (Core polyprotein) [Cleaved into: Matrix protein p15 (MA); RNA-binding phosphoprotein p12 (pp12); Capsid protein p30 (CA); Nucleocapsid protein p10-gag (NC-gag)]

3D Structure

Loading viewer...

Related Domains

Browse other domains in Gag_p30 →

Classification

AArchitecturealpha bundles(a.7)

XX-groupRetrovirus capsid protein(170)

HH-groupRetrovirus capsid protein N-terminal domain(170.2)

TT-groupRetrovirus capsid protein N-terminal domain(170.2.1)

FFamilyGag_p30(170.2.1.2)

Pfam Families

PF02093Gag_p30

Gag P30 core shell protein

ClanCL0148Viral_Gag

External Links

ECOD PDB View: 3BP9 RCSB PDB: 3BP9 PDBe: 3BP9 UniProt: P03336

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure