ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2po0A1 - ECOD Domain | ECOD

ECOD/Domains/e2po0A1

e2po0A1

UID: 000338037

PDB

Range: A:152-244
PDB: 2PO0 chain A(all domains)
UniProt: Q9V119 (all domains)
Gene: rrp41

Molecule: Probable exosome complex exonuclease 1

3D Structure

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Related Domains

Browse other domains in RNase_PH_C →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibonuclease PH domain 2-like(245)

HH-groupRibonuclease PH domain 2(245.1)

TT-groupRibonuclease PH domain 2(245.1.1)

FFamilyRNase_PH_C(245.1.1.1)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Pfam Families

PF03725RNase_PH_C

3' exoribonuclease family, domain 2

External Links

ECOD PDB View: 2PO0 RCSB PDB: 2PO0 PDBe: 2PO0 UniProt: Q9V119

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.