ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2of1A1 - ECOD Domain | ECOD

ECOD/Domains/e2of1A1

e2of1A1

UID: 000338501

PDB

Range: A:1-142
PDB: 2OF1 chain A(all domains)
UniProt: P00644 (all domains)
Gene: nuc

Molecule: Staphylococcal thermonuclease

3D Structure

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Related Domains

Browse other domains in SNase →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOB-fold(2)

HH-groupStaphylococcal nuclease(2.6)

TT-groupStaphylococcal nuclease(2.6.1)

FFamilySNase(2.6.1.1)

Ligands

in contact, ≤ 4 Å

Thymidine-3',5'-DiphosphateTHP
drugDrugBank DB04205
Calcium ionCA
metal

+ 1 additive (Dimethyl sulfoxide)

Pfam Families

Staphylococcal nuclease homologue

ClanCL0010SH3

External Links

ECOD PDB View: 2OF1 RCSB PDB: 2OF1 PDBe: 2OF1 UniProt: P00644

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Dimethyl sulfoxideDMS

DrugBank DB01093

Shown in the structure viewer. Drug annotations from DrugDomain.