ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q0PBY1_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q0PBY1_F1_nD2

Q0PBY1_F1_nD2

UID: 003386995

AlphaFold

Range: 71-218
AlphaFold: AF-Q0PBY1
UniProt: Q0PBY1 (all domains)
Gene: Cj0156c

Protein: Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.193)

3D Structure

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Related Domains

Browse other domains in Methyltrans_RNA →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupalpha/beta knot(2488)

HH-groupalpha/beta knot(2488.1)

TT-groupalpha/beta knot(2488.1.1)

FFamilyMethyltrans_RNA(2488.1.1.12)

Pfam Families

PF04452Methyltrans_RNA

RNA methyltransferase domain

ClanCL0098SPOUT

External Links

AlphaFold DB: Q0PBY1 UniProt: Q0PBY1

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 71-218