ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Grishin Lab
UT Southwestern
RCSB PDB
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Q0PAK4_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/Q0PAK4_F1_nD3

Q0PAK4_F1_nD3

UID: 003387027

AlphaFold

Range: 211-340
UniProt: Q0PAK4 (all domains)
Gene: rpoN

Protein: RNA polymerase sigma-54 factor

3D Structure

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Related Domains

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Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupThree-helical HTH(101.1.1)

FFamily(101.1.1.33)

Pfam Families

PF04552Sigma54_DBD

Sigma-54, DNA binding domain

ClanCL0123HTH

PF04963Sigma54_CBD

Sigma-54 factor, core binding domain

ClanCL0123HTH

External Links

UniProt: Q0PAK4

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