ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q9PM80_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/Q9PM80_F1_nD3

Q9PM80_F1_nD3

UID: 003387765

AlphaFold

Range: 241-315
AlphaFold: AF-Q9PM80
UniProt: Q9PM80 (all domains)
Gene: rpoA

Protein: DNA-directed RNA polymerase subunit alpha (RNAP subunit alpha) (EC 2.7.7.6) (RNA polymerase subunit alpha) (Transcriptase subunit alpha)

3D Structure

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Related Domains

Browse other domains in RNA_pol_A_CTD →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHhH/H2TH(102)

HH-groupSAM/DNA-glycosylase(102.1)

TT-groupSAM domain-like(102.1.1)

FFamilyRNA_pol_A_CTD(102.1.1.9)

Pfam Families

PF03118RNA_pol_A_CTD

Bacterial RNA polymerase, alpha chain C terminal domain

ClanCL0198HHH

External Links

AlphaFold DB: Q9PM80 UniProt: Q9PM80

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 241-315