ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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P43125_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/P43125_F1_nD3

P43125_F1_nD3

UID: 003390378

AlphaFold

Range: 946-1055
AlphaFold: AF-P43125
UniProt: P43125 (all domains)
Gene: rdgB

Protein: Protein retinal degeneration B (Probable calcium transporter rdgB)

3D Structure

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Related Domains

Browse other domains in PITM1-3 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyPITM1-3(11.1.1.634)

Pfam Families

PF24695PITM1-3

PITM 1-3, beta-sandwich domain

ClanCL0287Transthyretin

External Links

AlphaFold DB: P43125 UniProt: P43125

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 946-1055