ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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UT Southwestern
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Q9VKQ6_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q9VKQ6_F1_nD2

Q9VKQ6_F1_nD2

UID: 003398866

AlphaFold

Range: 391-480
AlphaFold: AF-Q9VKQ6
UniProt: Q9VKQ6 (all domains)
Gene: CG6729

Protein: Nonsense-mediated mRNA decay factor SMG8 (Protein smg-8 homolog)

3D Structure

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Related Domains

Browse other domains in Smg8_Smg9 →

Classification

AArchitecturealpha bundles(a.7)

XX-groupInterferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain(621)

HH-groupInterferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain(621.1)

TT-groupInterferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain(621.1.1)

FFamilySmg8_Smg9(621.1.1.2)

Pfam Families

PF10220Smg8_Smg9

Smg8_Smg9

External Links

AlphaFold DB: Q9VKQ6 UniProt: Q9VKQ6

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 391-480