ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q9VBZ6_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q9VBZ6_F1_nD2

Q9VBZ6_F1_nD2

UID: 003414622

AlphaFold

Range: 11-60,116-390,426-710,731-755
AlphaFold: AF-Q9VBZ6
UniProt: Q9VBZ6 (all domains)
Gene: Smg6

Protein: GH14566p (Smg6)

3D Structure

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Related Domains

Browse other domains in EST1_DNA_bind →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyEST1_DNA_bind(109.4.1.147)

Pfam Families

PF10373EST1_DNA_bind

Est1 DNA/RNA binding domain

ClanCL0020TPR

External Links

AlphaFold DB: Q9VBZ6 UniProt: Q9VBZ6

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 11-60,116-390,426-710,731-755