ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

Q9VRJ9_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q9VRJ9_F1_nD1

Q9VRJ9_F1_nD1

UID: 003415275

AlphaFold

Range: 6-85
AlphaFold: AF-Q9VRJ9
UniProt: Q9VRJ9 (all domains)
Gene: Yod1

Protein: Ubiquitin thioesterase Otu1 (EC 3.4.19.12) (Yod1 deubiquitinase)

3D Structure

Loading viewer...

Related Domains

Browse other domains in OTU1_UBXL →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupUbiquitin-related(221.1)

TT-groupUbiquitin-like(221.1.1)

FFamilyOTU1_UBXL(221.1.1.70)

Pfam Families

PF21403OTU1_UBXL

OTU1, UBXL domain

ClanCL0072Ubiquitin

External Links

AlphaFold DB: Q9VRJ9 UniProt: Q9VRJ9

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 6-85