ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q2QVM6_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q2QVM6_F1_nD2

Q2QVM6_F1_nD2

UID: 003420359

RepresentativeAlphaFold

Range: 106-249
AlphaFold: AF-Q2QVM6
UniProt: Q2QVM6 (all domains)
Gene: LOC_Os12g12300

Protein: Hydroxyproline-rich glycoprotein family protein, putative, expressed (Os12g0224500 protein) (cDNA clone:001-117-G03, full insert sequence)

3D Structure

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Related Domains

Browse other domains in Histone-lysine N-methyltransferase NSD-like, PHD zinc finger / Histone-lysine N-methyltransferase NSD-like, variant PHD zinc finger →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRING/U-box-like(376)

HH-groupRING/U-box-like(376.1)

TT-groupFYVE/PHD zinc finger(376.1.3)

FFamilyHistone-lysine N-methyltransferase NSD-like, PHD zinc finger / Histone-lysine N-methyltransferase NSD-like, variant PHD zinc finger(376.1.3.41)

Pfam Families

PF22908PHD_NSD

Histone-lysine N-methyltransferase NSD-like, PHD zinc finger

ClanCL0229RING

PF23004PHDvar_NSD

Histone-lysine N-methyltransferase NSD-like, variant PHD zinc finger

ClanCL0229RING

External Links

AlphaFold DB: Q2QVM6 UniProt: Q2QVM6

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 106-249