ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q5VRF7_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q5VRF7_F1_nD1

Q5VRF7_F1_nD1

UID: 003425318

AlphaFold

Range: 6-80
AlphaFold: AF-Q5VRF7
UniProt: Q5VRF7 (all domains)
Gene: Os06g0168400

Protein: DNA-directed RNA polymerase subunit

3D Structure

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Related Domains

Browse other domains in SHS2_Rpb7-N →

Classification

AArchitecturea+b two layers(a.11)

XX-groupDodecin subunit-like(872)

HH-groupFlavin-binding protein dodecin-like(872.1)

TT-groupFlavin-binding protein dodecin-like(872.1.1)

FFamilySHS2_Rpb7-N(872.1.1.1)

Pfam Families

PF03876SHS2_Rpb7-N

SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397

ClanCL0319SHS2

External Links

AlphaFold DB: Q5VRF7 UniProt: Q5VRF7

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 6-80