ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q5Z8P2_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q5Z8P2_F1_nD1

Q5Z8P2_F1_nD1

UID: 003428241

AlphaFold

Range: 61-135
AlphaFold: AF-Q5Z8P2
UniProt: Q5Z8P2 (all domains)
Gene: Os06g0717400

Protein: RNA pseudouridine synthase 2, chloroplastic (EC 5.4.99.-) (RNA pseudouridylate synthase 2) (RNA-uridine isomerase 2)

3D Structure

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Related Domains

Browse other domains in S4 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupUbiquitin-related(221.1)

TT-groupAlpha-L RNA-binding motif(221.1.2)

FFamilyS4(221.1.2.5)

Pfam Families

S4 domain

ClanCL0492S4

External Links

AlphaFold DB: Q5Z8P2 UniProt: Q5Z8P2

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 61-135