ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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UT Southwestern
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Q5Z4E0_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/Q5Z4E0_F1_nD3

Q5Z4E0_F1_nD3

UID: 003440639

AlphaFold

Range: 881-1475
AlphaFold: AF-Q5Z4E0
UniProt: Q5Z4E0 (all domains)
Gene: Os06g0305200

Protein: Os06g0305200 protein

3D Structure

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Related Domains

Browse other domains in Nucleoporin_C →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupNuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains(109.26)

TT-groupNuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains(109.26.1)

FFamilyNucleoporin_C(109.26.1.1)

Pfam Families

PF03177Nucleoporin_C

Non-repetitive/WGA-negative nucleoporin C-terminal

ClanCL0020TPR

External Links

AlphaFold DB: Q5Z4E0 UniProt: Q5Z4E0

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 881-1475