ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q5Z6B1_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q5Z6B1_F1_nD1

Q5Z6B1_F1_nD1

UID: 003443416

AlphaFold

Range: 17-120
AlphaFold: AF-Q5Z6B1
UniProt: Q5Z6B1 (all domains)
Gene: Os06g0530700

Protein: Probable tRNA-splicing endonuclease subunit Sen2 (EC 4.6.1.16) (tRNA-intron endonuclease Sen2)

3D Structure

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Related Domains

Browse other domains in tRNA_int_endo_N →

Classification

AArchitecturea+b two layers(a.11)

XX-groupHoming endonucleases-like(242)

HH-grouptRNA-intron endonuclease N-terminal domain-like(242.2)

TT-grouptRNA-intron endonuclease N-terminal domain-like(242.2.1)

FFamilytRNA_int_endo_N(242.2.1.2)

Pfam Families

PF02778tRNA_int_endo_N

tRNA intron endonuclease, N-terminal domain

ClanCL0476tRNA-IECD_N

External Links

AlphaFold DB: Q5Z6B1 UniProt: Q5Z6B1

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 17-120