ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q2QM87_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q2QM87_F1_nD1

Q2QM87_F1_nD1

UID: 003449126

AlphaFold

Range: 46-95
AlphaFold: AF-Q2QM87
UniProt: Q2QM87 (all domains)
Gene: LOC_Os12g41930

Protein: Os12g0613500 protein (SRP40, C-terminal domain containing protein, expressed) (cDNA clone:J033033A11, full insert sequence)

3D Structure

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Related Domains

Browse other domains in LisH_PAC1 →

Classification

AArchitecturealpha duplicates or obligate multimers(a.8)

XX-groupLis-homology dimerization domain(558)

HH-groupLis-homology dimerization domain(558.1)

TT-groupLis-homology dimerization domain(558.1.1)

FFamilyLisH_PAC1(558.1.1.15)

Pfam Families

PF24951LisH_PAC1

PAC1 LisH domain

ClanCL0561LisH

External Links

AlphaFold DB: Q2QM87 UniProt: Q2QM87

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 46-95