ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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UT Southwestern
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Q5JLX2_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q5JLX2_F1_nD1

Q5JLX2_F1_nD1

UID: 003451158

AlphaFold

Range: 11-65
AlphaFold: AF-Q5JLX2
UniProt: Q5JLX2 (all domains)
Gene: Os01g0891400

Protein: Ribosomal RNA-processing protein 40

3D Structure

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Related Domains

Browse other domains in Rrp40_N →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupalpha/beta-Hammerhead/Barrel-sandwich hybrid(325)

HH-groupalpha/beta-Hammerhead/Barrel-sandwich hybrid(325.1)

TT-groupRibosomal L27 protein(325.1.8)

FFamilyRrp40_N(325.1.8.3)

Pfam Families

PF18311Rrp40_N

Exosome complex exonuclease Rrp40 N-terminal domain

ClanCL0105Hybrid

External Links

AlphaFold DB: Q5JLX2 UniProt: Q5JLX2

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 11-65