ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q5VRH9_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/Q5VRH9_F1_nD3

Q5VRH9_F1_nD3

UID: 003454789

AlphaFold

Range: 226-300
AlphaFold: AF-Q5VRH9
UniProt: Q5VRH9 (all domains)
Gene: PUB12

Protein: U-box domain-containing protein 12 (EC 2.3.2.27) (Plant U-box protein 12) (OsPUB12) (RING-type E3 ubiquitin transferase PUB12)

3D Structure

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Related Domains

Browse other domains in U-box →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRING/U-box-like(376)

HH-groupRING/U-box-like(376.1)

TT-groupRING/U-box(376.1.1)

FFamilyU-box(376.1.1.8)

Pfam Families

U-box domain

ClanCL0229RING

External Links

AlphaFold DB: Q5VRH9 UniProt: Q5VRH9

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 226-300