ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q5Z880_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/Q5Z880_F1_nD2

Q5Z880_F1_nD2

UID: 003455650

AlphaFold

Range: 41-265
AlphaFold: AF-Q5Z880
UniProt: Q5Z880 (all domains)
Gene: HRD1

Protein: ERAD-associated E3 ubiquitin-protein ligase HRD1 (EC 2.3.2.27) (RING-type E3 ubiquitin transferase HRD1)

3D Structure

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Related Domains

Browse other domains in TPR_SYVN1_N →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyTPR_SYVN1_N(109.4.1.1375)

Pfam Families

PF25563TPR_SYVN1_N

E3 ubiquitin-protein ligase synoviolin-like, TPR repeats

ClanCL0020TPR

External Links

AlphaFold DB: Q5Z880 UniProt: Q5Z880

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 41-265