ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

B9FBY4_F1_nD2 - ECOD Domain | ECOD

ECOD/Domains/B9FBY4_F1_nD2

B9FBY4_F1_nD2

UID: 003458558

AlphaFold

Range: 296-530
AlphaFold: AF-B9FBY4
UniProt: B9FBY4 (all domains)
Gene: Os04g0561700

Protein: tRNA pseudouridine(55) synthase (EC 5.4.99.25) (tRNA pseudouridine 55 synthase) (tRNA pseudouridylate synthase) (tRNA-uridine isomerase)

3D Structure

Loading viewer...

Related Domains

Browse other domains in Pus10_C →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupPseudouridine synthase(304.102)

TT-groupPseudouridine synthase(304.102.1)

FFamilyPus10_C(304.102.1.7)

Pfam Families

PF21238Pus10_C

Pus10, C-terminal

ClanCL0649PseudoU_synth

External Links

AlphaFold DB: B9FBY4 UniProt: B9FBY4

Representative

This domain is classified based on similarity to:

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 296-530