ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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UT Southwestern
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Q6K9X0_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q6K9X0_F1_nD1

Q6K9X0_F1_nD1

UID: 003460465

AlphaFold

Range: 41-160,201-225,276-395,431-455,486-500
AlphaFold: AF-Q6K9X0
UniProt: Q6K9X0 (all domains)
Gene: Os02g0823800

Protein: Nonsense-mediated mRNA decay factor SMG8

3D Structure

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Related Domains

Browse other domains in Smg8_Smg9 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilySmg8_Smg9(2004.1.1.171)

Pfam Families

PF10220Smg8_Smg9

Smg8_Smg9

External Links

AlphaFold DB: Q6K9X0 UniProt: Q6K9X0

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 41-160,201-225,276-395,431-455,486-500