ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

Q65X25_F1_nD1 - ECOD Domain | ECOD

ECOD/Domains/Q65X25_F1_nD1

Q65X25_F1_nD1

UID: 003465961

AlphaFold

Range: 251-385,406-488
UniProt: Q65X25 (all domains)
Gene: Os05g0108000

Protein: tRNA pseudouridine(55) synthase (EC 5.4.99.25)

3D Structure

Loading viewer...

Related Domains

Browse other domains in TruB_N,TruB_C_2 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupPseudouridine synthase(304.102)

TT-groupPseudouridine synthase(304.102.1)

FFamilyTruB_N,TruB_C_2(304.102.1.6)

Pfam Families

TruB family pseudouridylate synthase (N terminal domain)

ClanCL0649PseudoU_synth

PF16198TruB_C_2

tRNA pseudouridylate synthase B C-terminal domain

ClanCL0649PseudoU_synth

External Links

UniProt: Q65X25

Downloads