ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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Q5JNB3_F1_nD4 - ECOD Domain | ECOD

ECOD/Domains/Q5JNB3_F1_nD4

Q5JNB3_F1_nD4

UID: 003469418

AlphaFold

Range: 1136-1150,1181-1555,1591-1770
AlphaFold: AF-Q5JNB3
UniProt: Q5JNB3 (all domains)
Gene: Os01g0977600

Protein: E3 ubiquitin-protein ligase listerin (EC 2.3.2.27) (RING-type E3 ubiquitin transferase listerin)

3D Structure

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Related Domains

Browse other domains in LTN1_E3_ligase_6th →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyLTN1_E3_ligase_6th(109.4.1.880)

Pfam Families

PF22999LTN1_E3_ligase_6th

LTN1 family HEAT repeat region

ClanCL0020TPR

External Links

AlphaFold DB: Q5JNB3 UniProt: Q5JNB3

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 1136-1150,1181-1555,1591-1770