ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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A0A5K4EF93_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/A0A5K4EF93_F1_nD3

A0A5K4EF93_F1_nD3

UID: 003469961

AlphaFold

Range: 176-270
AlphaFold: AF-A0A5K4EF93
UniProt: A0A5K4EF93 (all domains)

Protein: Nonsense-mediated mRNA decay protein 1 (Rent1),putative

3D Structure

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Related Domains

Browse other domains in UPF1_1B_dom →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupAlanine racemase-C(1.1.7)

FFamilyUPF1_1B_dom(1.1.7.41)

Pfam Families

PF18141UPF1_1B_dom

RNA helicase UPF1, 1B domain

ClanCL0866ALR_C-like

External Links

AlphaFold DB: A0A5K4EF93 UniProt: A0A5K4EF93

Representative

This domain is classified based on similarity to:

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Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 176-270