ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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A0A5K4F1X4_F1_nD3 - ECOD Domain | ECOD

ECOD/Domains/A0A5K4F1X4_F1_nD3

A0A5K4F1X4_F1_nD3

UID: 003479428

RepresentativeAlphaFold

Range: 286-820
AlphaFold: AF-A0A5K4F1X4
UniProt: A0A5K4F1X4 (all domains)

Protein: Pre-mRNA-processing factor 6 (PRP6 homolog) (U5 snRNP-associated 102 kDa protein)

3D Structure

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Related Domains

Browse other domains in TPR_14, TPR_19, HAT_Syf1_CNRKL1_C, HAT_PRP39_N, PRP6_TPR →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupARM repeat(109.4)

TT-groupARM repeat(109.4.1)

FFamilyTPR_14, TPR_19, HAT_Syf1_CNRKL1_C, HAT_PRP39_N, PRP6_TPR(109.4.1.2756)

Pfam Families

Tetratricopeptide repeat

ClanCL0020TPR

Tetratricopeptide repeat

ClanCL0020TPR

PF23231HAT_Syf1_CNRKL1_C

Pre-mRNA-splicing factor Syf1/CRNKL1 C-terminal HAT repeat

ClanCL0020TPR

PF23240HAT_PRP39_N

PRP39 N-terminal HAT repeat

External Links

AlphaFold DB: A0A5K4F1X4 UniProt: A0A5K4F1X4

Downloads

Full AlphaFold Structure (PDB)Full AlphaFold Structure (mmCIF)

Domain coordinates: residues 286-820

TPR

PF29376PRP6_TPR

PRP6, TPR-like domain

ClanCL0020TPR